Package: EmbedSOM
Version: 2.2.1
Title: Fast Embedding Guided by Self-Organizing Map
Authors@R: c(person("Mirek", "Kratochvil",
                    role = c("aut", "cre"),
                    email = "exa.exa@gmail.com"),
             person("Sofie", "Van Gassen",
                    role = "cph",
                    email = "sofie.vangassen@ugent.be"),
             person("Britt", "Callebaut",
                    role = "cph",
                    email = "britt.callebaut@ugent.be"),
             person("Yvan", "Saeys",
                    role = "cph",
                    email = "yvan.saeys@ugent.be"),
             person("Ron", "Wehrens",
                    role = "cph",
                    email = "ron.wehrens@gmail.com"))
Depends: R (>= 3.2)
Suggests: knitr, rmarkdown
Imports: ggplot2, igraph, Matrix, Rtsne, umap, uwot
Description: Provides a smooth mapping of multidimensional points into
        low-dimensional space defined by a self-organizing map.
        Designed to work with 'FlowSOM' and flow-cytometry use-cases.
        See Kratochvil et al. (2019)
        <doi:10.12688/f1000research.21642.1>.
License: GPL (>= 3)
URL: https://github.com/exaexa/EmbedSOM
Encoding: UTF-8
RoxygenNote: 7.3.3
Roxygen: list(markdown = TRUE)
VignetteBuilder: knitr
Config/pak/sysreqs: libglpk-dev libpng-dev libxml2-dev libssl-dev
        python3
Repository: https://exaexa.r-universe.dev
Date/Publication: 2026-03-08 21:27:35 UTC
RemoteUrl: https://github.com/exaexa/embedsom
RemoteRef: HEAD
RemoteSha: 734f57824ae7dabf75f9d79ae3db23bd694e556a
NeedsCompilation: yes
Packaged: 2026-06-09 07:45:55 UTC; root
Author: Mirek Kratochvil [aut, cre],
  Sofie Van Gassen [cph],
  Britt Callebaut [cph],
  Yvan Saeys [cph],
  Ron Wehrens [cph]
Maintainer: Mirek Kratochvil <exa.exa@gmail.com>